kallisto

kallisto 0.51.1 · pkgs/by-name/ka/kallisto/package.nix

Health

Risk

risk 8 low

+8 0.51.1 is behind upstream 0.52.0

Version

0.51.1 0.52.0 available

Channels

master 0.51.1 · nixos-unstable 0.51.1 · nixos-26.05 0.51.1 no channel is behind master

Hydra

succeeded 2w ago

Advisories

none open

Packaging

meta complete

Packagewhat each field means

Description

Near-optimal quantification of transcripts from RNA-seq data

Long description

kallisto is a program for quantifying abundances of transcripts from RNA sequencing data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

Homepage

https://pachterlab.github.io/kallisto

License

BSD-2-Clause

Platforms

24 platforms: Linux

Main program

kallisto

Source provenance

not set: built from source

Outputs

out