fastqc
fastqc 0.12.1 · pkgs/by-name/fa/fastqc/package.nix
Health
Risk
risk 9 low
- +8 0.12.1 is behind upstream 0.13.0
- +1 no versionCheckHook
Version
0.12.1 0.13.0 available
Channels
Hydra
succeeded 2d ago
Advisories
none open
Packaging
no versionCheckHook
Packagewhat each field means
Description
Quality control application for high throughput sequence data
Long description
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are
- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without running the interactive application
License
Platforms
45 platforms: Linux, Darwin
Main program
fastqcSource provenance
binaryNativeCodeOutputs
outStatus
not broken, not insecure, free
Maintainers
Version bumps 0
all open bumpsNone open. Upstream has 0.13.0: how to update a package.
Pull requests 2
chore: change deprecated `convert` and `magick convert` invocations to just `magick`
#522846 by av-gal · opened 4mo ago · checks pass
treewide: use `desktopItems` (plural) instead of `desktopItem`
#511149 by PerchunPak · opened 6mo ago
Issues 0
None open.