diamond

diamond 2.2.8 · pkgs/by-name/di/diamond/package.nix

Health

Risk

risk 1 low

+1 no versionCheckHook

Version

2.2.8 no newer release in its git tags

Channels

master 2.2.8 · nixos-unstable 2.2.8 · nixos-26.05 2.1.16 master is ahead of nixos-26.05

Hydra

succeeded 2w ago

Advisories

none open

Packaging

no versionCheckHook

Packagewhat each field means

Description

Accelerated BLAST compatible local sequence aligner

Long description

DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are: - Pairwise alignment of proteins and translated DNA at 100x-10,000x speed of BLAST. - Frameshift alignments for long read analysis. - Low resource requirements and suitable for running on standard desktops or laptops. - Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification. When using the tool in published research, please cite: - Buchfink B, Reuter K, Drost HG, "Sensitive protein alignments at tree-of-life scale using DIAMOND", Nature Methods 18, 366–368 (2021). doi:10.1038/s41592-021-01101-x

Homepage

https://github.com/bbuchfink/diamond

Changelog

https://github.com/bbuchfink/diamond/releases/tag/v2.2.8

License

GPL-3.0-or-later

Platforms

not set

Main program

diamond

Source provenance

not set: built from source